genome.fa.s18545.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018545.1 Corchorus olitorius cultivar O-4 contig18578, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104766

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6640--6664	11	2.3	11	100	0	50	76	8	0	16	1.02
6693--6729	19	1.9	20	94	5	67	72	10	0	16	1.10
7334--7491	50	3.2	50	90	1	246	33	15	13	37	1.87
7883--8353	87	5.5	85	84	10	536	31	20	13	34	1.91
8174--8199	12	2.2	12	100	0	52	26	7	11	53	1.63
8094--8281	92	2.0	92	97	0	358	29	19	13	38	1.89
8186--8357	79	2.2	80	96	1	319	29	19	13	37	1.90
7940--8366	171	2.5	173	90	3	654	30	20	13	36	1.91
8608--8801	50	3.9	50	93	1	309	29	29	13	27	1.94
8754--9099	69	5.0	69	89	2	487	27	29	15	28	1.96
8754--9099	140	2.5	139	89	3	500	27	29	15	28	1.96
9577--9735	29	5.5	29	79	5	133	18	16	25	38	1.92
15709--15798	27	3.3	27	90	0	144	36	25	20	17	1.94
19885--19912	14	2.0	14	100	0	56	35	14	7	42	1.73
27087--27156	22	3.2	22	67	16	65	11	34	41	12	1.79
27101--27169	21	3.2	21	66	18	61	11	33	42	13	1.80
27088--27187	43	2.3	43	98	1	191	12	33	42	13	1.80
27242--27287	11	4.2	11	86	8	67	82	0	17	0	0.67
27244--27287	23	1.9	23	95	0	79	81	0	18	0	0.68
27237--27300	23	2.7	24	83	9	78	78	0	21	0	0.76
28068--28141	28	2.7	27	74	14	71	25	21	13	39	1.90
34658--34686	15	1.9	15	100	0	58	34	10	6	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43529--43591	32	1.9	33	83	3	83	26	23	20	28	1.99
54858--54886	14	2.0	15	93	6	51	62	3	0	34	1.12
56806--56837	2	16.0	2	100	0	64	50	0	0	50	1.00
74630--74713	42	2.0	42	100	0	168	28	23	9	38	1.86
76713--76770	28	2.1	28	83	6	73	31	18	15	34	1.93
79247--79271	9	2.8	9	100	0	50	12	0	12	76	1.04
81108--81184	22	3.6	21	80	5	82	38	6	12	41	1.69
89532--89572	21	2.0	21	86	9	59	39	21	9	29	1.86
92848--92874	13	2.1	13	100	0	54	48	14	29	7	1.71
96416--96440	13	1.9	13	100	0	50	44	8	0	48	1.32

Tables:   1

The End!