Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018548.1 Corchorus olitorius cultivar O-4 contig18581, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5057
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:715 original size:92 final size:92

Alignment explanation


    Indices: 557--740  Score: 314
    Period size: 92  Copynumber: 2.0  Consensus size: 92

        547 AACTTAAGAT

                                                                        *    
        557 AGGTGGCTAATCACACCATAAAAAAGATTAGTGGCGACTCCTTCTTACCAACGTCGTCTCGGCAG
          1 AGGTGGCTAATCACACCATAAAAAAGATTAGTGGCGACTCCTTCTTACCAACGTCGTCTCAGCAG

                                       
        622 GGTTCCCCAAACCCGAACGTTTCGACA
         66 GGTTCCCCAAACCCGAACGTTTCGACA

                             *                                    *      *   
        649 AGGTGGCTAATCACACCTTAAAAAAGATTAGTGGCGACTCCTTCTTACCAACGTTGTCTCATCAG
          1 AGGTGGCTAATCACACCATAAAAAAGATTAGTGGCGACTCCTTCTTACCAACGTCGTCTCAGCAG

                    **                 
        714 GGTTCCCCGGACCCGAACGTTTCGACA
         66 GGTTCCCCAAACCCGAACGTTTCGACA

        741 GCTTGGCGAC


Statistics
Matches: 86,  Mismatches: 6, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  92   86  1.00

ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23


Consensus pattern (92 bp):   
AGGTGGCTAATCACACCATAAAAAAGATTAGTGGCGACTCCTTCTTACCAACGTCGTCTCAGCAG
GGTTCCCCAAACCCGAACGTTTCGACA
Done.