Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018550.1 Corchorus olitorius cultivar O-4 contig18583, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52186

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5096--5143
17
2.8
17
90
0
69
31
16
10
41
1.82
5260--5294
15
2.4
15
85
4
54
45
8
20
25
1.79
5284--5328
15
3.0
15
81
12
56
37
13
11
37
1.80
8106--8142
7
5.4
7
90
3
58
43
2
10
43
1.53
12890--12928
16
2.5
16
87
4
53
12
5
5
76
1.11
12869--12916
24
2.0
25
83
4
62
16
6
6
70
1.28
18916--18960
23
2.0
23
95
0
81
53
0
28
17
1.44
19069--19118
14
3.6
14
80
0
55
16
12
52
20
1.75
19352--19424
30
2.5
30
95
2
130
31
31
24
12
1.92
24294--24361
29
2.3
29
100
0
136
20
16
5
57
1.60
26758--26872
57
2.0
56
96
1
212
34
24
1
39
1.66
26936--27018
42
2.0
42
97
0
157
31
7
13
48
1.69
30072--30105
11
3.1
11
86
0
50
23
5
17
52
1.66
32738--32909
86
2.0
86
97
0
326
37
25
19
18
1.93
36922--36954
5
6.6
5
100
0
66
0
36
21
42
1.53
39992--40035
22
2.0
23
86
4
63
15
52
20
11
1.74
43008--43108
21
4.8
21
88
3
150
25
26
19
27
1.99
43008--43120
21
5.4
20
88
4
145
25
25
19
29
1.99
51216--51257
22
1.9
22
85
0
57
11
23
38
26
1.90

Tables:   1

The End!