Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018552.1 Corchorus olitorius cultivar O-4 contig18585, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3337
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30


Found at i:2994 original size:6 final size:6

Alignment explanation


    Indices: 2983--3012  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       2973 CAAATCAAAT

                                              
       2983 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
          1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA

       3013 TAAACAATCT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (6 bp):   
AGAAAA

Done.