Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018554.1 Corchorus olitorius cultivar O-4 contig18587, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6096
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:567 original size:183 final size:183

Alignment explanation


    Indices: 259--615  Score: 678
    Period size: 183  Copynumber: 2.0  Consensus size: 183

        249 TTTCATTATG

                                                                      *      
        259 TTCGAGAGATGGAACATGAAGGAGAAGTGAGTCTGCAGCATTGTCCAAGTGAAGAGCAGTTAGCA
          1 TTCGAGAGATGGAACATGAAGGAGAAGTGAGTCTGCAGCATTGTCCAAGTGAAGAGCAATTAGCA

                                                                             
        324 GACCTCTTCACCAAGCCATTGTCCAAGAACAGATTTGAAGCTATGAGACTTAAGCTTAATGTTTG
         66 GACCTCTTCACCAAGCCATTGTCCAAGAACAGATTTGAAGCTATGAGACTTAAGCTTAATGTTTG

                                       *         *               
        389 CAGCAAACCATCCAAGGAGGAGTGATAGATTTGAATGTGTTTGCAGCAAACCA
        131 CAGCAAACCATCCAAGGAGGAGTGATAAATTTGAATGAGTTTGCAGCAAACCA

                                                                             
        442 TTCGAGAGATGGAACATGAAGGAGAAGTGAGTCTGCAGCATTGTCCAAGTGAAGAGCAATTAGCA
          1 TTCGAGAGATGGAACATGAAGGAGAAGTGAGTCTGCAGCATTGTCCAAGTGAAGAGCAATTAGCA

                                          *                                  
        507 GACCTCTTCACCAAGCCATTGTCCAAGAACTGATTTGAAGCTATGAGACTTAAGCTTAATGTTTG
         66 GACCTCTTCACCAAGCCATTGTCCAAGAACAGATTTGAAGCTATGAGACTTAAGCTTAATGTTTG

                                                        
        572 CAGCAAACCATCCAAGGAGGAGTGATAAATTTGAATGAGTTTGC
        131 CAGCAAACCATCCAAGGAGGAGTGATAAATTTGAATGAGTTTGC

        616 TAGCTAGTTT


Statistics
Matches: 170,  Mismatches: 4, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 183  170  1.00

ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24


Consensus pattern (183 bp):   
TTCGAGAGATGGAACATGAAGGAGAAGTGAGTCTGCAGCATTGTCCAAGTGAAGAGCAATTAGCA
GACCTCTTCACCAAGCCATTGTCCAAGAACAGATTTGAAGCTATGAGACTTAAGCTTAATGTTTG
CAGCAAACCATCCAAGGAGGAGTGATAAATTTGAATGAGTTTGCAGCAAACCA
Done.