Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018562.1 Corchorus olitorius cultivar O-4 contig18595, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79527

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5447--5509
30
2.1
30
85
5
83
20
7
4
66
1.36
6556--6607
18
2.8
18
85
8
61
0
23
0
76
0.78
7400--7479
32
2.5
32
100
0
160
31
15
30
23
1.95
12204--12312
57
1.9
57
86
0
155
28
15
10
45
1.78
12350--12466
53
2.2
52
84
4
146
28
18
6
46
1.75
12434--13361
35
27.2
34
78
14
527
25
16
5
52
1.64
12434--13102
35
18.5
35
81
12
653
25
15
4
54
1.61
12466--12561
48
2.0
48
93
0
165
25
15
6
53
1.65
12382--12665
70
3.6
81
78
13
236
26
15
5
52
1.64
12516--13102
102
5.5
104
84
9
713
25
15
4
54
1.59
12516--13102
137
4.1
139
85
8
742
25
15
4
54
1.59
12972--13102
69
1.9
68
89
4
201
25
15
5
54
1.62
13086--13130
20
2.1
22
84
8
58
20
20
4
55
1.60
12514--13150
172
3.9
158
85
8
723
25
16
4
54
1.60
13068--13214
52
2.8
52
80
8
163
25
16
3
54
1.58
13163--13361
32
6.1
32
86
5
254
28
17
7
47
1.73
13172--13361
101
1.9
101
88
0
290
27
17
6
47
1.73
13182--13361
69
2.7
64
84
8
234
28
17
7
46
1.75
13695--13742
21
2.2
23
85
7
64
33
10
6
50
1.62
16838--16863
1
26.0
1
100
0
52
0
0
0
100
0.00
16955--17028
33
2.1
33
82
12
85
43
6
12
37
1.69
22053--22099
16
2.9
16
80
0
67
38
29
17
14
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25377--25410
11
3.1
11
87
12
52
38
17
5
38
1.74
27297--27334
19
1.9
20
89
10
60
68
26
5
0
1.11
28521--28622
52
2.0
52
94
0
177
34
21
15
28
1.94
28471--28751
129
2.2
128
90
0
436
35
22
16
25
1.94
28650--28855
52
4.0
52
87
5
290
37
21
15
25
1.93
28817--28938
28
4.5
28
75
8
126
33
20
15
30
1.94
28765--28938
80
2.2
80
91
2
278
35
20
16
28
1.94
29561--29593
16
2.0
17
94
5
59
39
12
12
36
1.80
29881--29917
16
2.3
16
90
0
56
5
21
0
72
1.04
33707--33759
24
2.1
27
86
10
76
7
20
30
41
1.80
37783--37816
1
34.0
1
100
0
68
0
0
0
100
0.00
38159--38231
24
3.0
24
88
4
103
56
10
15
17
1.67
42913--42987
1
75.0
1
70
0
51
85
13
1
0
0.67
42913--42988
6
12.8
6
90
6
120
84
14
1
0
0.69
42913--42980
29
2.3
30
95
5
122
85
14
0
0
0.60
44176--44200
3
8.3
3
100
0
50
68
0
0
32
0.90
47843--47953
58
1.9
58
96
0
204
44
31
7
17
1.76
48085--48111
2
13.5
2
100
0
54
51
0
0
48
1.00
48763--48789
7
3.9
7
100
0
54
29
11
29
29
1.91
54028--54126
50
1.9
53
87
6
150
29
22
7
41
1.80
68984--69019
6
5.8
6
90
3
54
16
5
0
77
0.94

Tables:   1

The End!