Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018563.1 Corchorus olitorius cultivar O-4 contig18596, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5481
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31


Found at i:436 original size:6 final size:6

Alignment explanation


    Indices: 425--451  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        415 ACCAATCCTA

                                           
        425 AAAACT AAAACT AAAACT AAAACT AAA
          1 AAAACT AAAACT AAAACT AAAACT AAA

        452 CATGCAAAAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.70, C:0.15, G:0.00, T:0.15


Consensus pattern (6 bp):   
AAAACT

Done.