Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018565.1 Corchorus olitorius cultivar O-4 contig18598, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5297
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31


Found at i:1858 original size:17 final size:17

Alignment explanation


    Indices: 1824--1858  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1814 GATCAAGTGT

                *       *    
       1824 AGAAGTAAAAAGGAAAA
          1 AGAAATAAAAAGAAAAA

                             
       1841 AGAAATAAAAAGAAAAA
          1 AGAAATAAAAAGAAAAA

             
       1858 A
          1 A

       1859 AAACTATTTA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06


Consensus pattern (17 bp):   
AGAAATAAAAAGAAAAA
Done.