Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018568.1 Corchorus olitorius cultivar O-4 contig18601, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3411
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32


Found at i:722 original size:22 final size:23

Alignment explanation


    Indices: 697--744  Score: 55
    Period size: 22  Copynumber: 2.2  Consensus size: 23

        687 CTGGTCCTCG

                                   
        697 CGGGGC-ATGGCCAAGTCATGAC
          1 CGGGGCTATGGCCAAGTCATGAC

                         **      * 
        719 C-GGGCTATGGCCTGGTCATGTC
          1 CGGGGCTATGGCCAAGTCATGAC

                
        741 CGGG
          1 CGGG

        745 TGCCATCGAG


Statistics
Matches: 21,  Mismatches: 3, Indels: 3
        0.78            0.11        0.11

Matches are distributed among these distances:
  21    4  0.19
  22   15  0.71
  23    2  0.10

ACGTcount: A:0.15, C:0.27, G:0.40, T:0.19


Consensus pattern (23 bp):   
CGGGGCTATGGCCAAGTCATGAC
Done.