Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018569.1 Corchorus olitorius cultivar O-4 contig18602, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4652
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:3742 original size:15 final size:15

Alignment explanation


    Indices: 3724--3752  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       3714 TTTTTTTAGT

                           
       3724 TTAATTGTTTTCTGC
          1 TTAATTGTTTTCTGC

                          
       3739 TTAATTGTTTTCTG
          1 TTAATTGTTTTCTG

       3753 TCAACCTCTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.14, C:0.10, G:0.14, T:0.62


Consensus pattern (15 bp):   
TTAATTGTTTTCTGC
Done.