Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018574.1 Corchorus olitorius cultivar O-4 contig18607, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40687

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2378--2419
18
2.3
18
92
8
68
33
9
21
35
1.86
4452--4616
22
7.5
22
83
0
206
23
25
27
23
2.00
4452--4615
66
2.5
66
87
1
231
22
25
28
23
2.00
4605--4695
27
3.4
27
84
6
112
21
19
25
32
1.97
4739--4864
36
3.5
35
90
6
189
20
11
33
34
1.89
5280--5318
21
1.9
20
84
5
51
28
5
17
48
1.68
5804--6132
36
9.2
36
87
1
392
18
13
32
35
1.90
5796--6116
108
3.0
108
87
0
437
19
14
32
34
1.91
15902--16047
72
2.0
72
85
0
193
34
13
14
36
1.86
23391--23432
15
3.0
14
80
10
50
80
4
11
2
0.95
23885--23937
27
2.0
27
92
0
88
26
16
28
28
1.97
24288--24330
19
2.3
19
83
0
50
48
0
2
48
1.14
37149--37174
13
2.0
13
100
0
52
15
0
30
53
1.42
37524--37566
19
2.3
19
83
0
50
48
0
2
48
1.14
39480--40132
31
20.6
30
69
14
217
21
26
13
37
1.91
39493--40190
63
11.0
63
89
3
896
22
26
13
38
1.91
40079--40190
57
2.0
57
94
1
199
22
24
13
40
1.89

Tables:   1

The End!