Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018575.1 Corchorus olitorius cultivar O-4 contig18608, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3490
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31


Found at i:2385 original size:16 final size:16

Alignment explanation


    Indices: 2367--2442  Score: 91
    Period size: 16  Copynumber: 4.8  Consensus size: 16

       2357 AATTTTTGGT

                           *
       2367 ACCCGAACCCGAAATT
          1 ACCCGAACCCGAAATG

                   *      * 
       2383 ACCCGAATCC-AAACG
          1 ACCCGAACCCGAAATG

                             
       2398 ACCCGAACCCGAAAATG
          1 ACCCGAACCCG-AAATG

                *     *     
       2415 ACCCAAACCCAAAATG
          1 ACCCGAACCCGAAATG

                        
       2431 ACCCGAACCCGA
          1 ACCCGAACCCGA

       2443 TCAACCCGAC


Statistics
Matches: 49,  Mismatches: 9, Indels: 4
        0.79            0.15        0.06

Matches are distributed among these distances:
  15   12  0.24
  16   24  0.49
  17   13  0.27

ACGTcount: A:0.41, C:0.39, G:0.13, T:0.07


Consensus pattern (16 bp):   
ACCCGAACCCGAAATG
Done.