Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018577.1 Corchorus olitorius cultivar O-4 contig18610, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41808

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2527--2577
23
2.3
22
82
3
57
9
9
35
45
1.71
3212--3304
33
2.8
33
81
3
114
29
15
16
39
1.88
5015--5081
30
2.2
30
78
2
71
34
20
10
34
1.87
6968--7005
16
2.4
16
90
0
58
7
15
36
39
1.77
9950--9990
21
2.0
21
85
0
55
17
26
29
26
1.97
14291--14326
19
1.9
18
94
5
63
27
22
5
44
1.75
19989--20022
16
2.2
16
89
5
52
61
14
5
17
1.52
22194--22228
16
2.2
16
94
0
61
54
11
8
25
1.64
23780--23839
21
3.0
20
64
9
50
21
15
25
38
1.92
26162--26210
23
2.0
25
84
7
66
4
16
10
69
1.32
32856--32880
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!