Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018578.1 Corchorus olitorius cultivar O-4 contig18611, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3515
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:383 original size:15 final size:16

Alignment explanation


    Indices: 350--389  Score: 55
    Period size: 15  Copynumber: 2.6  Consensus size: 16

        340 TTACTTTGCT

                            
        350 TTGTTTTCTAGTATAA
          1 TTGTTTTCTAGTATAA

                        *   
        366 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTATAA

               *     
        381 TTGCTTTCT
          1 TTGTTTTCT

        390 TTCAACCTCT


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   13  0.59
  16    9  0.41

ACGTcount: A:0.15, C:0.10, G:0.12, T:0.62


Consensus pattern (16 bp):   
TTGTTTTCTAGTATAA
Done.