Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018579.1 Corchorus olitorius cultivar O-4 contig18612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39825

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8533--8649
38
3.1
38
80
8
130
23
16
19
41
1.90
14463--14518
21
2.8
20
71
10
60
19
10
28
41
1.85
14465--14520
19
2.8
19
75
17
60
16
10
28
44
1.80
17455--17548
41
2.3
41
83
3
109
48
13
13
23
1.78
20532--20757
29
7.7
30
84
5
162
44
24
15
15
1.85
20504--20757
58
4.3
59
84
1
271
44
24
15
14
1.84
20504--20757
59
4.3
58
82
3
260
44
24
15
14
1.84
20533--20763
88
2.6
87
84
2
284
44
24
16
15
1.86
21261--21610
176
2.0
176
100
0
700
29
8
14
47
1.73
22391--22444
19
2.6
21
77
19
60
38
3
18
38
1.69
23359--23466
50
2.2
50
94
0
198
11
23
18
47
1.80
24783--24818
10
3.6
10
84
0
54
38
2
8
50
1.47
38187--38246
26
2.3
26
88
0
93
21
23
18
36
1.95
38157--38342
65
2.9
65
87
1
257
25
20
17
36
1.94
38263--38319
26
2.2
26
83
0
69
28
26
12
33
1.92
38288--38521
39
6.0
39
84
3
256
26
18
14
41
1.89
38880--38987
50
2.2
50
93
0
189
11
22
18
48
1.79

Tables:   1

The End!