genome.fa.s18587.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018587.1 Corchorus olitorius cultivar O-4 contig18620, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12423

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
853--882	12	2.4	13	88	11	53	13	6	13	66	1.43
1195--1231	15	2.5	15	90	0	56	37	13	8	40	1.74
2936--2972	14	2.6	14	91	0	56	72	27	0	0	0.84
3487--3526	20	2.0	20	90	0	62	60	5	20	15	1.53
3461--3593	67	2.0	68	83	1	169	46	15	24	12	1.81
3548--3613	20	3.3	20	76	0	78	59	12	15	13	1.62
3641--3682	20	2.1	20	95	0	75	59	9	19	11	1.59
3497--3737	88	2.8	88	85	1	288	49	16	20	13	1.78
3687--4432	48	15.1	48	84	6	920	42	18	23	15	1.88
4018--4183	59	3.0	59	81	11	174	44	16	22	16	1.86
4326--4489	59	2.8	59	87	0	238	45	17	23	14	1.85
5078--5336	50	5.1	50	80	6	218	37	15	4	43	1.67
5166--5225	30	2.0	30	87	6	86	38	18	3	40	1.67
5196--5245	20	2.5	20	87	6	66	38	16	2	44	1.59
5083--5336	101	2.5	101	81	5	255	37	15	4	42	1.68
5589--6132	173	3.1	173	93	0	899	29	18	17	35	1.93
5733--5822	41	2.2	41	96	4	164	20	20	21	38	1.93
5904--5995	41	2.2	41	80	0	103	28	20	18	32	1.96
5773--6439	305	2.2	307	92	2	1110	30	18	17	34	1.93
5998--6264	132	2.0	132	95	0	480	32	16	16	33	1.92
6210--6293	41	2.0	41	90	4	134	25	20	17	36	1.94
6078--6509	175	2.5	174	92	2	724	28	18	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5600--6509	478	1.9	480	92	1	1533	29	18	17	34	1.93
6385--6475	41	2.2	41	96	0	164	21	20	19	37	1.95
6500--6539	18	2.2	18	95	0	71	37	25	20	17	1.94

Tables:   1

The End!