Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018588.1 Corchorus olitorius cultivar O-4 contig18621, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5532
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:2933 original size:21 final size:21

Alignment explanation


    Indices: 2886--2934  Score: 55
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       2876 TTGGAATGGC

                           *     
       2886 GATGGCACAGGCATAGCCGGT
          1 GATGGCACAGGCATAACCGGT

                     *   *        
       2907 -ACTGGCACGGGCTTAACCGGT
          1 GA-TGGCACAGGCATAACCGGT

                   
       2928 GATGGCA
          1 GATGGCA

       2935 TGGTGAATGG


Statistics
Matches: 23,  Mismatches: 3, Indels: 4
        0.77            0.10        0.13

Matches are distributed among these distances:
  20    1  0.04
  21   21  0.91
  22    1  0.04

ACGTcount: A:0.22, C:0.24, G:0.37, T:0.16


Consensus pattern (21 bp):   
GATGGCACAGGCATAACCGGT
Done.