Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018596.1 Corchorus olitorius cultivar O-4 contig18629, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19506

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1166--1205
15
2.6
16
84
8
55
12
12
12
62
1.55
6290--6352
32
2.0
31
90
3
99
23
4
33
38
1.76
7537--7583
16
2.8
17
81
12
62
51
0
2
46
1.13
11301--11347
16
2.9
16
90
0
76
27
21
4
46
1.69
11263--11404
74
1.9
73
84
1
185
24
20
8
46
1.78
11383--11467
8
10.6
8
75
0
62
30
22
2
44
1.65
11386--11499
24
4.8
24
80
4
113
29
24
3
42
1.71
11379--11499
48
2.5
48
88
4
165
29
24
3
42
1.71
11499--11991
107
4.6
107
86
2
641
17
15
27
39
1.90
11505--11990
71
6.8
71
69
10
242
17
15
27
39
1.89
11499--11989
215
2.3
214
84
4
614
17
15
27
39
1.90
11505--11994
36
13.7
36
71
10
299
17
14
27
40
1.89
13831--14634
71
11.2
71
74
6
459
18
15
26
40
1.90
14089--14487
178
2.2
178
84
2
543
17
16
25
40
1.90
13831--14297
107
4.4
107
86
3
598
18
14
26
40
1.89
14261--14634
107
3.5
107
87
1
498
17
16
25
40
1.90
14000--14565
285
2.0
286
86
2
807
17
15
26
40
1.89
13855--14631
36
21.7
36
73
5
329
18
15
26
39
1.90
15368--15398
14
2.2
14
100
0
62
51
9
12
25
1.70
18386--18523
37
3.8
35
82
14
131
28
16
18
36
1.93
19440--19472
15
2.2
15
94
0
57
33
6
39
21
1.78

Tables:   1

The End!