Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018599.1 Corchorus olitorius cultivar O-4 contig18632, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4706
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29


Found at i:4113 original size:15 final size:14

Alignment explanation


    Indices: 4085--4121  Score: 56
    Period size: 15  Copynumber: 2.6  Consensus size: 14

       4075 GTAAAACAAT

                          
       4085 AAAACAAACAAAAC
          1 AAAACAAACAAAAC

               *           
       4099 AAACCAAACCAAAAC
          1 AAAACAAA-CAAAAC

                    
       4114 AAAACAAA
          1 AAAACAAA

       4122 GCAACCATTT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  14    7  0.35
  15   13  0.65

ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00


Consensus pattern (14 bp):   
AAAACAAACAAAAC
Done.