Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018601.1 Corchorus olitorius cultivar O-4 contig18634, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72717

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5617--5674
19
3.1
19
80
7
64
41
5
1
51
1.34
5627--5674
2
23.5
2
80
19
55
43
6
0
50
1.27
5968--5997
2
15.0
2
92
0
51
53
0
0
46
1.00
12832--12862
16
1.9
16
93
0
53
41
12
38
6
1.69
20117--20336
108
2.0
108
94
0
386
19
6
21
52
1.68
20308--20407
49
2.0
49
94
0
173
28
7
20
45
1.77
20338--20704
183
2.0
183
98
0
716
31
7
26
34
1.84
20642--20704
20
3.1
20
68
4
54
38
1
28
31
1.67
22371--22407
2
19.0
2
94
5
67
51
0
0
48
1.00
22893--22930
11
3.5
11
85
10
51
57
0
0
42
0.98
24070--24142
31
2.5
31
84
6
89
32
21
8
36
1.83
24070--24148
28
2.7
30
79
13
83
30
21
8
39
1.84
25082--25159
31
2.7
28
84
7
95
39
10
20
29
1.85
38159--38236
2
39.5
2
85
2
95
47
3
3
44
1.39
39001--39058
19
2.9
19
80
9
71
37
12
18
31
1.88
43109--43145
1
37.0
1
88
0
56
0
2
2
94
0.36
43102--43145
21
2.1
21
82
0
52
2
2
6
88
0.67
49841--49873
16
2.1
16
94
0
57
30
24
15
30
1.95
54672--54714
23
1.9
23
90
4
70
16
0
18
65
1.28
55080--55148
36
1.9
36
100
0
138
13
26
11
49
1.75
60603--60671
36
1.9
36
100
0
138
49
11
26
13
1.75
61886--61919
15
2.2
16
89
5
52
5
29
0
64
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62862--62893
5
6.6
5
92
7
57
21
0
15
62
1.32
69226--69272
15
3.1
16
81
9
62
2
29
0
68
1.02
69424--69466
15
2.9
14
76
10
50
0
32
0
67
0.91

Tables:   1

The End!