Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018602.1 Corchorus olitorius cultivar O-4 contig18635, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25304

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
442--483
22
1.9
22
90
0
66
11
54
23
9
1.66
8950--8988
2
19.5
2
100
0
78
48
0
0
51
1.00
10962--11221
130
2.0
130
87
4
382
38
10
2
48
1.52
12437--12478
22
1.9
22
90
0
66
16
16
23
42
1.88
14557--14604
17
2.9
17
77
17
57
50
14
6
29
1.67
14557--14604
15
3.1
15
72
21
53
50
14
6
29
1.67
17286--17328
6
6.8
6
97
2
68
37
13
0
48
1.43
17552--17632
39
2.0
40
90
2
128
48
8
4
38
1.56
17623--17669
25
1.9
24
86
4
67
29
12
6
51
1.65
17743--18358
204
3.0
203
97
0
1142
36
11
8
43
1.72
18874--18943
36
1.9
36
91
0
113
60
8
10
21
1.55
19902--20038
29
4.8
29
85
1
159
23
14
21
40
1.90
19908--20097
86
2.2
86
84
1
256
22
15
21
40
1.91
19933--20095
29
5.7
29
85
7
208
20
16
22
40
1.91
19933--20095
57
2.8
58
88
3
233
20
16
22
40
1.91
24587--24701
58
2.0
58
87
3
169
32
22
14
30
1.94

Tables:   1

The End!