Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018609.1 Corchorus olitorius cultivar O-4 contig18642, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8105
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32


Found at i:642 original size:17 final size:16

Alignment explanation


    Indices: 592--643  Score: 54
    Period size: 14  Copynumber: 3.3  Consensus size: 16

        582 AATTTATGCT

                            
        592 TTAATTTTCAATTTCA
          1 TTAATTTTCAATTTCA

              *  *         *
        608 TTTATCTT--ATTTCT
          1 TTAATTTTCAATTTCA

                             
        622 TTAATTTTCAAGTTTCA
          1 TTAATTTTCAA-TTTCA

                 
        639 TTAAT
          1 TTAAT

        644 AAACTATATC


Statistics
Matches: 27,  Mismatches: 6, Indels: 5
        0.71            0.16        0.13

Matches are distributed among these distances:
  14   11  0.41
  16    7  0.26
  17    9  0.33

ACGTcount: A:0.27, C:0.12, G:0.02, T:0.60


Consensus pattern (16 bp):   
TTAATTTTCAATTTCA
Done.