Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018619.1 Corchorus olitorius cultivar O-4 contig18652, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 812

Length: 1354
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36


Found at i:305 original size:4 final size:4

Alignment explanation


    Indices: 296--326  Score: 62
    Period size: 4  Copynumber: 7.8  Consensus size: 4

        286 CTTTGAAAAA

                                                  
        296 AATT AATT AATT AATT AATT AATT AATT AAT
          1 AATT AATT AATT AATT AATT AATT AATT AAT

        327 AAAAAGAAAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (4 bp):   
AATT

Done.