Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018627.1 Corchorus olitorius cultivar O-4 contig18660, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87532

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1026--1345
161
2.0
161
99
0
631
25
14
21
38
1.92
2574--2613
7
6.0
7
91
5
57
30
7
0
62
1.23
2575--2620
14
3.5
13
85
11
58
30
4
2
63
1.26
2575--2622
6
7.3
6
88
11
60
33
4
2
60
1.27
4455--4490
18
1.9
19
88
5
56
38
0
13
47
1.44
9624--9716
24
3.9
24
92
2
134
31
18
20
30
1.96
9627--9716
12
7.5
12
66
18
53
31
17
21
30
1.96
10603--13929
772
4.3
770
83
4
3819
35
19
19
25
1.96
14385--14438
24
2.2
25
93
3
92
38
16
3
40
1.66
15050--15099
6
7.8
6
91
4
73
84
0
2
14
0.72
15050--15099
13
3.8
13
92
7
84
84
0
2
14
0.72
15041--15099
27
2.1
27
93
3
100
83
0
3
13
0.78
15533--15581
22
2.2
22
81
0
62
46
16
14
22
1.82
19200--19276
32
2.4
32
100
0
154
20
28
29
20
1.98
19325--19350
6
4.3
6
100
0
52
15
34
30
19
1.93
20905--21013
58
1.9
57
88
5
166
31
13
23
31
1.94
22281--22350
36
1.9
36
91
0
113
21
10
8
60
1.55
23490--23536
25
1.9
24
95
4
85
55
8
6
29
1.55
23527--23607
39
2.0
40
92
2
137
37
3
8
50
1.51
25917--25964
24
2.0
23
88
4
69
29
20
8
41
1.81
30839--30866
13
2.2
13
100
0
56
53
14
0
32
1.41
41471--41528
21
2.9
20
77
7
64
32
18
10
37
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42647--42742
37
2.6
37
74
9
90
37
15
14
32
1.88
42785--42818
17
2.0
17
88
0
50
17
0
17
64
1.29
43435--43497
25
2.6
25
87
2
92
55
26
6
11
1.59
45486--45605
59
2.1
58
96
1
222
41
11
19
27
1.86
50524--50549
2
13.0
2
100
0
52
50
0
0
50
1.00
51518--51557
19
2.1
19
90
0
62
12
50
5
32
1.62
57932--57970
18
2.2
17
86
8
60
28
30
5
35
1.79
57937--57982
18
2.6
18
96
0
83
30
28
6
34
1.82
58074--58103
13
2.3
13
94
0
51
0
26
0
73
0.84
58082--58116
6
5.8
6
87
12
54
0
20
0
80
0.72
58082--58116
11
2.9
12
91
8
54
0
20
0
80
0.72
60983--61039
23
2.4
23
80
8
71
7
7
22
63
1.44
60983--61050
23
2.9
23
77
18
70
7
8
23
60
1.52
61764--61862
40
2.6
38
78
13
107
29
14
16
40
1.87
67084--67168
42
2.0
42
86
0
116
43
4
12
38
1.64
73214--73328
27
4.4
27
83
6
110
18
17
26
38
1.92
77826--77973
32
4.8
31
83
8
187
53
6
19
20
1.67
77826--77973
62
2.4
62
95
2
262
53
6
19
20
1.67
78766--78806
19
2.2
19
100
0
82
26
19
26
26
1.99
80287--80330
22
2.0
22
82
8
54
25
25
6
43
1.79
82162--82205
22
2.0
22
95
0
79
54
13
6
25
1.63
83981--84140
83
1.9
83
93
0
275
22
22
26
28
1.99

Tables:   1

The End!