Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001863.1 Corchorus olitorius cultivar O-4 contig01863, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1193
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38


Found at i:1022 original size:36 final size:36

Alignment explanation


    Indices: 975--1044  Score: 122
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        965 TTCAATAACC

                         *      *               
        975 TTACATTTTTTGTGATTTTGGTTATCATATTTCTTA
          1 TTACATTTTTTGTAATTTTGATTATCATATTTCTTA

                                              
       1011 TTACATTTTTTGTAATTTTGATTATCATATTTCT
          1 TTACATTTTTTGTAATTTTGATTATCATATTTCT

       1045 CCAAAATTCT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  36   32  1.00

ACGTcount: A:0.21, C:0.09, G:0.09, T:0.61


Consensus pattern (36 bp):   
TTACATTTTTTGTAATTTTGATTATCATATTTCTTA
Done.