Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018630.1 Corchorus olitorius cultivar O-4 contig18663, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30511

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
475--625
76
2.0
76
81
10
175
17
29
28
24
1.97
1682--1755
28
2.6
28
87
4
96
39
28
17
14
1.89
3314--3385
3
24.3
3
88
2
110
0
33
0
66
0.92
3728--3779
21
2.5
21
70
0
50
46
9
19
25
1.80
3992--4041
24
2.1
24
92
0
82
12
16
26
46
1.81
7678--7849
12
14.3
12
88
0
236
18
33
2
45
1.64
7983--8067
12
7.3
12
65
7
50
22
29
1
47
1.59
7980--8068
45
2.0
45
93
0
151
23
30
1
44
1.60
7983--8067
24
3.7
24
78
9
113
22
29
1
47
1.59
9163--9199
16
2.3
16
95
0
65
10
8
0
81
0.89
13909--13950
15
2.7
15
96
3
75
11
7
14
66
1.43
16053--16344
81
3.6
81
87
1
388
31
28
17
22
1.97
19462--19500
20
1.9
21
89
5
62
5
17
0
76
0.96
24279--24389
38
2.9
38
98
0
213
36
19
5
37
1.75
28651--28677
2
13.5
2
100
0
54
51
0
0
48
1.00
30257--30298
17
2.4
18
88
4
59
59
2
0
38
1.10

Tables:   1

The End!