genome.fa.s18631.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018631.1 Corchorus olitorius cultivar O-4 contig18664, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56282

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2292--2347	27	2.1	26	83	9	69	35	3	12	48	1.58
7403--7431	8	3.8	8	95	4	51	79	20	0	0	0.74
11967--12007	2	20.5	2	94	0	73	46	0	0	53	1.00
13607--13807	103	2.0	103	94	1	359	53	14	7	23	1.67
14153--14241	41	2.2	41	87	4	126	46	13	2	38	1.56
15022--15065	21	2.1	21	82	0	52	43	9	6	40	1.63
15100--15144	21	2.1	21	91	0	72	40	11	20	28	1.86
15469--15527	28	2.1	28	83	0	73	35	32	18	13	1.90
15497--15557	31	1.9	31	83	3	77	32	27	21	18	1.96
16745--16786	17	2.4	18	81	18	54	50	0	7	42	1.30
19917--19987	34	2.1	34	97	0	133	43	4	26	25	1.73
23890--23946	30	1.9	30	88	0	87	31	19	24	24	1.98
26868--26901	15	2.4	14	90	5	50	55	2	20	20	1.56
27244--27302	30	2.0	30	90	6	93	30	16	30	22	1.96
27346--27383	18	2.1	19	90	5	60	28	13	39	18	1.88
30614--30672	30	2.0	30	86	6	84	32	20	28	18	1.96
32969--33033	20	3.0	23	82	17	102	47	4	21	26	1.70
32996--33233	55	4.3	53	72	20	200	50	6	17	25	1.70
33046--33080	15	2.3	15	90	0	52	48	2	22	25	1.64
33061--33265	32	6.6	32	77	14	182	50	7	17	25	1.71
33013--33116	47	2.2	48	91	1	165	50	5	18	25	1.69
33119--33258	65	2.2	66	87	5	196	51	7	15	25	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33134--33258	33	3.8	33	92	3	200	51	7	15	26	1.69
33134--33258	65	1.9	65	90	4	198	51	7	15	26	1.69
33246--33280	15	2.3	15	90	0	52	48	2	22	25	1.64
33213--33310	47	2.1	46	86	5	135	48	7	18	25	1.73
33269--33426	35	4.8	31	82	13	133	48	5	18	27	1.69
33270--33494	103	2.1	109	76	18	242	49	4	16	28	1.66
33264--33486	67	3.3	67	85	7	256	49	4	17	28	1.66
33296--33486	36	5.5	35	85	7	246	49	3	17	29	1.63
33320--33499	35	5.1	36	83	8	135	51	3	16	27	1.62
33521--33667	36	4.5	33	76	9	131	49	5	17	27	1.68
33578--33756	62	2.8	64	77	18	187	49	6	18	25	1.71
33661--33751	27	3.1	27	68	22	76	48	5	18	27	1.70
33586--33752	60	2.7	61	85	7	207	48	6	18	26	1.72
33755--33820	26	2.5	26	82	4	71	56	6	18	19	1.62
35021--35045	1	25.0	1	100	0	50	100	0	0	0	0.00
38141--38188	2	24.5	2	95	4	89	50	0	0	50	1.00
38416--39170	402	1.9	399	80	7	875	36	12	15	36	1.85
44082--44119	17	2.2	17	90	0	58	42	18	10	28	1.83
44820--44873	28	1.9	28	84	0	72	44	9	5	40	1.60
49324--49603	151	1.9	151	97	0	533	45	6	32	16	1.73
53472--53503	2	15.5	2	93	6	55	50	3	0	46	1.17
55047--55088	21	2.0	21	90	0	66	42	9	19	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55048--55212	22	7.5	22	73	12	117	41	9	11	37	1.73
55110--55220	43	2.6	45	77	12	124	45	9	7	37	1.65

Tables:   1

The End!