Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018634.1 Corchorus olitorius cultivar O-4 contig18667, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4464
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:3233 original size:33 final size:33

Alignment explanation


    Indices: 3190--3264  Score: 89
    Period size: 33  Copynumber: 2.3  Consensus size: 33

       3180 TTTTTTTTTT

                 *       *    *               
       3190 AAAACCTAAAACCGGTGGGAACTTTCCCAATT-A
          1 AAAACTTAAAACCAGTGGCAACTTTCCC-ATTGA

                        *                   *
       3223 AAAACTTAAAACTAGTGGCAACTTTCCCATTGT
          1 AAAACTTAAAACCAGTGGCAACTTTCCCATTGA

                     
       3256 AAAACTTAA
          1 AAAACTTAA

       3265 TGAAATTCTT


Statistics
Matches: 36,  Mismatches: 5, Indels: 2
        0.84            0.12        0.05

Matches are distributed among these distances:
  32    3  0.08
  33   33  0.92

ACGTcount: A:0.41, C:0.21, G:0.12, T:0.25


Consensus pattern (33 bp):   
AAAACTTAAAACCAGTGGCAACTTTCCCATTGA
Done.