Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018638.1 Corchorus olitorius cultivar O-4 contig18671, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 32800
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32
Found at i:103 original size:21 final size:20
Alignment explanation
Indices: 79--121 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
69 CCTTAGGCAA
*
79 CTCCAATGAGTTTGAAACCTT
1 CTCCAATGAGCTTGAAA-CTT
100 CTCCAATGAGCTTGAAACTT
1 CTCCAATGAGCTTGAAACTT
120 CT
1 CT
122 TTGTGAGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (20 bp):
CTCCAATGAGCTTGAAACTT
Found at i:3204 original size:21 final size:21
Alignment explanation
Indices: 3180--3225 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
3170 GCCACGACCA
*
3180 CCTCTTCCA-CGACCTCCTCGG
1 CCTC-TCCAGCGACCACCTCGG
3201 CCTCTCCAGCGACCACCTCGG
1 CCTCTCCAGCGACCACCTCGG
3222 CCTC
1 CCTC
3226 GATAAGAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.11, C:0.54, G:0.15, T:0.20
Consensus pattern (21 bp):
CCTCTCCAGCGACCACCTCGG
Found at i:10609 original size:15 final size:16
Alignment explanation
Indices: 10580--10619 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
10570 TGCACTAAAG
10580 AAAGAGAAAGAAAAAAA
1 AAAGA-AAAGAAAAAAA
*
10597 AAAGAAAAG-AAAAAG
1 AAAGAAAAGAAAAAAA
10612 AAAGAAAA
1 AAAGAAAA
10620 AATAATGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.59
16 4 0.18
17 5 0.23
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAGAAAAGAAAAAAA
Found at i:10619 original size:10 final size:11
Alignment explanation
Indices: 10576--10620 Score: 58
Period size: 11 Copynumber: 4.3 Consensus size: 11
10566 CAAGTGCACT
*
10576 AAAG-AAAGAG
1 AAAGAAAAGAA
*
10586 AAAGAAAAAAA
1 AAAGAAAAGAA
10597 AAAGAAAAGAA
1 AAAGAAAAGAA
10608 AAAG-AAAGAA
1 AAAGAAAAGAA
10618 AAA
1 AAA
10621 ATAATGAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
10 13 0.42
11 18 0.58
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAGAAAAGAA
Found at i:11504 original size:36 final size:36
Alignment explanation
Indices: 11424--12016 Score: 704
Period size: 36 Copynumber: 16.7 Consensus size: 36
11414 ATTTCAGATG
* * * * *
11424 CTTCAGTTCATTTCAGTTGACCCAGGGCGGT-TTTT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
* * * *
11459 ATTTAGTTTATTTCAATAGATCCACGGCGATCCTTT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
* *
11495 CTTCAGTTTATTTCAGTTGA-CCAGGGCGGT-CTTT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
* *
11529 CTTCAGTTTATTTCAGTTGATCCAGGGTGATCCTTT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
*
11565 CTTCAGTTTATTTCAATGGATCCAGGGCGATCCTTT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
* * *
11601 CTTCAGTTTATTTCAATTGACCCAGGGTGATCCTAT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
*
11637 -TTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
* * *
11672 CTTCAGTTTATTTCAATTGACCCAGGGTGATCCTAT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
*
11708 -TTCAGTTTATTTCAATAGATCCAGGGCGATCCTTT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
*
11743 CTTCAGTTTATTTCAATAGATCCAGGGCGATCCTTT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
* * * *
11779 CTTTAGTTTATTTCAATTGACCCAGGGTGGTCCTATT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCT-TT
*
11816 -TT-AGTTTATTTCAATAGATCCAGGGCGATCCTTT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
*
11850 CTTCAGTTTATTTCAATAGATCCAGGGCGATCCTTT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
* *
11886 CTTCAGTTTATTTCAGTTGACCCAGGGCGAT-CTTT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
* * * * *
11921 ATTCCGTTTATTTCAGTTAACCCAGGGC-AGTCC-TT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGA-TCCTTT
* * * * *
11956 CTTCAATTTATTCCAGTTGACCCAGGGCGGTCC-TT
1 CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
* *
11991 CTTCAATTTATTTCAGTTGATCCAGG
1 CTTCAGTTTATTTCAATTGATCCAGG
12017 TTGATCCATG
Statistics
Matches: 488, Mismatches: 59, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
34 27 0.06
35 213 0.44
36 246 0.50
37 2 0.00
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (36 bp):
CTTCAGTTTATTTCAATTGATCCAGGGCGATCCTTT
Found at i:11658 original size:71 final size:72
Alignment explanation
Indices: 11424--12016 Score: 713
Period size: 71 Copynumber: 8.4 Consensus size: 72
11414 ATTTCAGATG
* * * * * * * * *
11424 CTTCAGTTCATTTCAGTTGACCCAGGGCGGT-TTTTATTTAGTTTATTTCAATAGATCCACGGCG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
11488 ATCCTTT
66 ATCCTTT
* * * *
11495 CTTCAGTTTATTTCAGTTGA-CCAGGGCGGT-CTTTCTTCAGTTTATTTCAGTTGATCCAGGGTG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
11558 ATCCTTT
66 ATCCTTT
* * *
11565 CTTCAGTTTATTTCAATGGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGTG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
*
11630 ATCCTAT
66 ATCCTTT
*
11637 -TTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGTG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
*
11701 ATCCTAT
66 ATCCTTT
* * * *
11708 -TTCAGTTTATTTCAATAGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATAGATCCAGGGCG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
11772 ATCCTTT
66 ATCCTTT
* * * * * * *
11779 CTTTAGTTTATTTCAATTGACCCAGGGTGGTCCTATT-TT-AGTTTATTTCAATAGATCCAGGGC
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCT-TTCTTCAGTTTATTTCAATTGACCCAGGGC
11842 GATCCTTT
65 GATCCTTT
* * *
11850 CTTCAGTTTATTTCAATAGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAGTTGACCCAGGGCG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
11915 AT-CTTT
66 ATCCTTT
* * * * * * *
11921 ATTCCGTTTATTTCAGTTAACCCAGGGC-AGTCC-TTCTTCAATTTATTCCAGTTGACCCAGGGC
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGA-TCCTTTCTTCAGTTTATTTCAATTGACCCAGGGC
*
11984 GGTCC-TT
65 GATCCTTT
*
11991 CTTCAATTTATTTCAGTTGATCCAGG
1 CTTCAGTTTATTTCAGTTGATCCAGG
12017 TTGATCCATG
Statistics
Matches: 465, Mismatches: 49, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
70 117 0.25
71 255 0.55
72 91 0.20
73 2 0.00
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (72 bp):
CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
ATCCTTT
Found at i:11682 original size:107 final size:107
Alignment explanation
Indices: 11424--12016 Score: 718
Period size: 107 Copynumber: 5.6 Consensus size: 107
11414 ATTTCAGATG
* * * * * * * * *
11424 CTTCAGTTCATTTCAGTTGACCCAGGGCGGT-TTTTATTTAGTTTATTTCAATAGATCCACGGCG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
* *
11488 ATCCTTTCTTCAGTTTATTTCAGTTGA-CCAGGGCGGT-CTTT
66 ATCCTTT-TTCAGTTTATTTCAATTGACCCAGGGCGATCCTTT
* * *
11529 CTTCAGTTTATTTCAGTTGATCCAGGGTGATCCTTTCTTCAGTTTATTTCAATGGATCCAGGGCG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
* *
11594 ATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGTGATCCTAT
66 ATCCTTT-TTCAGTTTATTTCAATTGACCCAGGGCGATCCTTT
*
11637 -TTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGTG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
* * *
11701 ATCCTATTTCAGTTTATTTCAATAGATCCAGGGCGATCCTTT
66 ATCCTTTTTCAGTTTATTTCAATTGACCCAGGGCGATCCTTT
* * * *
11743 CTTCAGTTTATTTCAATAGATCCAGGGCGATCCTTTCTTTAGTTTATTTCAATTGACCCAGGGTG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
* * *
11808 GTCCTATTTT-AGTTTATTTCAATAGATCCAGGGCGATCCTTT
66 ATCCT-TTTTCAGTTTATTTCAATTGACCCAGGGCGATCCTTT
* * *
11850 CTTCAGTTTATTTCAATAGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAGTTGACCCAGGGCG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
* * *
11915 AT-CTTTATTCCGTTTATTTCAGTTAACCCAGGGC-AGTCC-TT
66 ATCCTTT-TTCAGTTTATTTCAATTGACCCAGGGCGA-TCCTTT
* * * * * * *
11956 CTTCAATTTATTCCAGTTGACCCAGGGCGGTCC-TTCTTCAATTTATTTCAGTTGATCCAGG
1 CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGG
12017 TTGATCCATG
Statistics
Matches: 436, Mismatches: 44, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
105 55 0.13
106 119 0.27
107 256 0.59
108 6 0.01
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (107 bp):
CTTCAGTTTATTTCAGTTGATCCAGGGCGATCCTTTCTTCAGTTTATTTCAATTGACCCAGGGCG
ATCCTTTTTCAGTTTATTTCAATTGACCCAGGGCGATCCTTT
Found at i:12038 original size:45 final size:42
Alignment explanation
Indices: 11989--12141 Score: 101
Period size: 45 Copynumber: 3.7 Consensus size: 42
11979 AGGGCGGTCC
11989 TTCTTCAATTTATTTCAGTTGATCCAGGTTGATCCATGGTGATCT
1 TTCTTCAATTTATTTCAGTTGATCCAGG-TGATCCA-GG-GATCT
**
12034 TTCTTCAGA-ACATTTCAGTTGA-CCTAGG-G---C--GG-TCT
1 TTCTTCA-ATTTATTTCAGTTGATCC-AGGTGATCCAGGGATCT
* *
12069 CTCTTCAATTTATTTCAGTCGATCCA-GTGGATCCAGGGCGATCTT
1 TTCTTCAATTTATTTCAGTTGATCCAGGT-GATCCA-GG-GATC-T
* *
12114 TTCTTCAGTTTATTCCAGTTGATCCAGG
1 TTCTTCAATTTATTTCAGTTGATCCAGG
12142 GCGATCTTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 31
0.67 0.08 0.25
Matches are distributed among these distances:
34 2 0.02
35 20 0.24
36 4 0.05
37 1 0.01
39 1 0.01
40 1 0.01
42 1 0.01
43 2 0.02
44 4 0.05
45 44 0.54
46 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (42 bp):
TTCTTCAATTTATTTCAGTTGATCCAGGTGATCCAGGGATCT
Found at i:12087 original size:80 final size:80
Alignment explanation
Indices: 11969--12144 Score: 230
Period size: 80 Copynumber: 2.2 Consensus size: 80
11959 CAATTTATTC
* * * *
11969 CAGTTGACCCAGGGCGGTCCTTCTTCAATTTATTTCAGTTGATCCAGGTTGATCCATGGTGATC-
1 CAGTTGACCCAGGGCGGTCCTTCTTCAATTTATTTCAGTCGATCCA-GTGGATCCAGGGCGATCT
12033 TTTCTTCAGAACATTT
65 TTTCTTCAGAACATTT
*
12049 CAGTTGACCTAGGGCGGT-CTCTCTTCAATTTATTTCAGTCGATCCAGTGGATCCAGGGCGATCT
1 CAGTTGACCCAGGGCGGTCCT-TCTTCAATTTATTTCAGTCGATCCAGTGGATCCAGGGCGATCT
*** *
12113 TTTCTTCAGTTTATTC
65 TTTCTTCAGAACATTT
*
12129 CAGTTGATCCAGGGCG
1 CAGTTGACCCAGGGCG
12145 ATCTTTTCTG
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 16 0.19
80 67 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (80 bp):
CAGTTGACCCAGGGCGGTCCTTCTTCAATTTATTTCAGTCGATCCAGTGGATCCAGGGCGATCTT
TTCTTCAGAACATTT
Found at i:12161 original size:36 final size:36
Alignment explanation
Indices: 12091--12171 Score: 119
Period size: 36 Copynumber: 2.2 Consensus size: 36
12081 TTTCAGTCGA
*
12091 TCCAGTGGATCCAGGGCGATCTTTTCTTCAGTTTAT
1 TCCAGTTGATCCAGGGCGATCTTTTCTTCAGTTTAT
*
12127 TCCAGTTGATCCAGGGCGATCTTTTCTGT-GGTTTAT
1 TCCAGTTGATCCAGGGCGATCTTTTCT-TCAGTTTAT
*
12163 TTCAGTTGA
1 TCCAGTTGA
12172 CCGCAAATTG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
36 40 0.98
37 1 0.02
ACGTcount: A:0.16, C:0.20, G:0.23, T:0.41
Consensus pattern (36 bp):
TCCAGTTGATCCAGGGCGATCTTTTCTTCAGTTTAT
Found at i:12564 original size:30 final size:30
Alignment explanation
Indices: 12528--13254 Score: 895
Period size: 30 Copynumber: 24.1 Consensus size: 30
12518 CTTTATCAGC
* *
12528 TTATTTTCAATCCTGGTTTAGGATCTTTG-T
1 TTATTTT-AATCCTGGTTGAGGATCATTGCT
*
12558 TTATTTTAATCCTGGTTGAGGATCGTTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* *
12588 TTATTTTAATCCTGGTTGAGGATCGTTGTT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
*
12618 TTATTTTAATCCTGGTTGAGGATCTTTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* * *
12648 TTTTTTTAATCCTGGTTTAGGATTATTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* ** * *
12678 CTATTTCGATCCTGGTTTAGGATCATCGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
** * *
12708 TTATTTCGATCCTGGTTTAAGATCATTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* *
12738 TTATTCTAATCCTGCTTGAGGATCATTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* * *
12768 TGATTTATAATCCTAGTTTAGGATCATTGCT
1 TTATTT-TAATCCTGGTTGAGGATCATTGCT
*
12799 TTATTCTAATCCTGGTTGAGGATCATTG-T
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* * * *
12828 TGCATTTATAATCTTGGTTTAGGATCGTTGCT
1 T-TATTT-TAATCCTGGTTGAGGATCATTGCT
12860 TTATTTTAATCCTGGTTGAGGATCATTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* *
12890 TTATTTTAATCCTGGTTGATGATCGTTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* *
12920 TTATTTTAATCCTGGTTTAGGATCGTTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
*
12950 TTATTTTAATCCTGGTTGAGGATCATTGAT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
*
12980 TTATTTTAATCCTGGTTGAGGATCGTTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
*
13010 TTATTTTAATCCTGGTTGAGGATCGTTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* * *
13040 TTATTTTAATCCTTGTTGAAGATCTTTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* * *
13070 TTATTTTAATCCTGATTTAGGATTATTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* ** *
13100 CTATTTCGATCCTGGTTTG-GGATCATCGCT
1 TTATTTTAATCCTGG-TTGAGGATCATTGCT
** *
13130 TTATTTCGATCCTGGTTTAGGATCATTGCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* *
13160 TTATTTTAATCCTGGTTGAGGATTATTTCT
1 TTATTTTAATCCTGGTTGAGGATCATTGCT
* *
13190 TCATTTATAATCCTGGTTTAGGATCATTGCT
1 TTATTT-TAATCCTGGTTGAGGATCATTGCT
13221 TTATTTTAATCCTGGTTTG-GGATCATTGCT
1 TTATTTTAATCCTGG-TTGAGGATCATTGCT
13251 TTAT
1 TTAT
13255 CAGTTAATCC
Statistics
Matches: 607, Mismatches: 81, Indels: 18
0.86 0.11 0.03
Matches are distributed among these distances:
29 23 0.04
30 504 0.83
31 78 0.13
32 2 0.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.48
Consensus pattern (30 bp):
TTATTTTAATCCTGGTTGAGGATCATTGCT
Found at i:32623 original size:22 final size:23
Alignment explanation
Indices: 32592--32643 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 23
32582 GAAAATGAAC
*
32592 AAAAGGAATCA-GGAAGAAAAAG
1 AAAAGAAATCAGGGAAGAAAAAG
*
32614 GAAAGAAATCATGGGAAGAAAAAG
1 AAAAGAAATCA-GGGAAGAAAAAG
32638 AAAAGA
1 AAAAGA
32644 GCTTGGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 9 0.36
24 16 0.64
ACGTcount: A:0.63, C:0.04, G:0.27, T:0.06
Consensus pattern (23 bp):
AAAAGAAATCAGGGAAGAAAAAG
Found at i:32667 original size:2 final size:2
Alignment explanation
Indices: 32660--32723 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
32650 GTTTCTGTTT
32660 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
32702 AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG
32724 TAGTAGTAGT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:32730 original size:3 final size:3
Alignment explanation
Indices: 32722--32800 Score: 158
Period size: 3 Copynumber: 26.3 Consensus size: 3
32712 AGAGAGAGAG
32722 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT
32770 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT A
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT A
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 76 1.00
ACGTcount: A:0.34, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
AGT
Done.