Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018641.1 Corchorus olitorius cultivar O-4 contig18674, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8803

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1153--1226
38
2.0
38
92
7
125
25
25
20
28
1.99
1221--1423
101
2.0
99
92
1
334
38
18
15
26
1.91
1221--1423
50
4.1
50
90
1
336
38
18
15
26
1.91
1460--1514
26
2.2
25
83
9
67
32
18
23
25
1.97
1425--1661
96
2.5
96
90
0
339
37
17
21
23
1.94
1486--2209
35
20.9
36
72
12
243
39
22
19
18
1.92
1521--1646
61
2.1
60
83
4
155
36
18
23
22
1.95
1550--1605
26
2.2
25
80
3
67
33
19
25
21
1.97
1647--1765
62
1.9
63
87
1
177
42
28
16
11
1.84
1781--2199
106
3.9
106
81
6
454
39
22
19
18
1.92
1708--2199
71
6.9
70
77
6
355
39
22
18
18
1.92
3374--3446
7
10.3
7
75
21
55
2
13
1
82
0.85
3372--3446
19
3.9
18
75
16
71
2
14
1
81
0.87
3374--3435
23
2.7
22
78
7
70
1
16
1
80
0.87
4251--4286
19
1.9
19
88
5
56
8
11
0
80
0.90
5943--5967
13
1.9
13
100
0
50
88
0
0
12
0.53

Tables:   1

The End!