Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018643.1 Corchorus olitorius cultivar O-4 contig18676, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42594

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
343--595
121
2.0
127
89
7
392
37
10
1
49
1.49
581--619
14
2.9
13
80
3
51
41
2
2
53
1.28
1900--1952
10
4.8
11
77
13
56
56
9
0
33
1.32
5379--5488
52
2.2
52
85
4
154
37
8
8
46
1.64
8958--8994
2
18.5
2
100
0
74
51
0
0
48
1.00
18720--18805
43
2.0
43
97
0
163
32
11
17
38
1.86
18763--18880
59
2.0
60
91
1
193
27
11
19
41
1.85
19940--20007
21
3.3
21
71
8
77
25
8
17
48
1.76
19933--20017
40
2.1
40
100
0
170
21
10
17
50
1.76
25743--25810
28
2.4
28
77
2
82
52
4
7
35
1.49
37477--37636
82
2.0
82
93
0
275
42
7
12
37
1.71

Tables:   1

The End!