Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018644.1 Corchorus olitorius cultivar O-4 contig18677, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37066

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
790--837
25
1.9
25
84
16
64
45
0
2
52
1.12
1158--1203
23
2.0
23
95
0
83
34
41
4
19
1.71
2093--2117
13
1.9
13
100
0
50
16
12
16
56
1.68
4240--4265
3
8.7
3
100
0
52
30
0
34
34
1.58
4882--4941
14
4.4
14
77
6
61
8
8
25
58
1.55
4867--4940
27
2.7
27
89
4
112
10
9
22
56
1.62
4979--5019
21
2.0
21
90
0
64
12
12
9
65
1.46
5002--5075
28
2.7
28
87
6
98
9
8
22
59
1.55
5015--5075
14
4.4
14
74
0
59
8
8
22
60
1.52
4864--5167
135
2.2
137
88
4
463
10
10
21
57
1.63
5115--5156
22
1.9
22
85
0
57
9
14
11
64
1.50
6593--6653
30
2.0
30
96
0
113
36
21
6
36
1.79
12938--13068
64
2.0
65
94
1
228
39
9
18
32
1.82
15988--16029
11
3.7
11
83
3
57
78
16
4
0
0.91
15988--16029
6
7.3
6
84
10
52
78
16
4
0
0.91
16210--16314
29
3.5
30
80
14
112
22
21
20
35
1.96
19069--19123
27
2.1
27
89
3
85
43
7
14
34
1.73
22107--22191
44
2.0
42
86
4
116
22
15
17
44
1.86
22271--22369
31
3.3
31
85
8
150
32
18
25
24
1.97
36424--36465
3
14.0
3
100
0
84
33
0
0
66
0.92
36635--36776
49
3.0
48
82
9
157
51
5
15
27
1.66

Tables:   1

The End!