Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018646.1 Corchorus olitorius cultivar O-4 contig18679, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4028
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30


Found at i:3048 original size:33 final size:33

Alignment explanation


    Indices: 2978--3115  Score: 129
    Period size: 33  Copynumber: 4.2  Consensus size: 33

       2968 ATGATCAACC

                                     ** *      
       2978 AAAACAGATTT-GTTTTCATCACAATTAGCATCC-
          1 AAAACAGATTTAG-TTTCATCACAAACAACA-CCT

                                              
       3011 AAAACAGAATTT-GTTTCATCACAAACAACACCT
          1 AAAACAG-ATTTAGTTTCATCACAAACAACACCT

                          *                * 
       3044 AAAACAGATTTAGTGTCATCACAAACAACACTT
          1 AAAACAGATTTAGTTTCATCACAAACAACACCT

               **  *      *       *       *  
       3077 AAATTAGGTTTAGTATCATCACTAACAACATCT
          1 AAAACAGATTTAGTTTCATCACAAACAACACCT

                  
       3110 AAAACA
          1 AAAACA

       3116 CTCTTTGCAA


Statistics
Matches: 88,  Mismatches: 14, Indels: 6
        0.81            0.13        0.06

Matches are distributed among these distances:
  32    6  0.07
  33   77  0.88
  34    5  0.06

ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28


Consensus pattern (33 bp):   
AAAACAGATTTAGTTTCATCACAAACAACACCT
Done.