Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018651.1 Corchorus olitorius cultivar O-4 contig18684, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11778
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30

Warning! 5 characters in sequence are not A, C, G, or T


Found at i:1936 original size:51 final size:51

Alignment explanation


    Indices: 1852--1953  Score: 125
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       1842 TTCATATTTT

                                       **         *            
       1852 TCTTGTTTAGATCTTGTCTCAGGACACCCAAACACTCTTTTAGTGTTTCTC
          1 TCTTGTTTAGATCTTGTCTCAGGACACAAAAACACTCTATTAGTGTTTCTC

                                 *     *         *    *         
       1903 TCTTGTTTCA-ATCTTGTCTCCGGACATAAAAACACTGTATTGGTGTTTCTC
          1 TCTTGTTT-AGATCTTGTCTCAGGACACAAAAACACTCTATTAGTGTTTCTC

       1954 ATTCAGAAAT


Statistics
Matches: 43,  Mismatches: 7, Indels: 2
        0.83            0.13        0.04

Matches are distributed among these distances:
  51   42  0.98
  52    1  0.02

ACGTcount: A:0.21, C:0.24, G:0.15, T:0.41


Consensus pattern (51 bp):   
TCTTGTTTAGATCTTGTCTCAGGACACAAAAACACTCTATTAGTGTTTCTC
Done.