genome.fa.s18652.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018652.1 Corchorus olitorius cultivar O-4 contig18685, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46792

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6264--6301	2	19.5	2	94	5	69	50	0	0	50	1.00
7093--7155	32	2.0	32	87	0	90	22	6	31	39	1.79
7094--7162	32	2.2	32	83	0	84	23	7	30	39	1.82
7337--7378	22	1.9	22	95	0	75	9	14	30	45	1.77
8132--8264	65	2.0	65	98	0	257	17	3	22	57	1.54
8282--8418	68	2.0	68	100	0	274	26	10	29	33	1.89
10989--11058	31	2.2	32	85	5	90	21	31	12	34	1.91
26629--26657	14	2.0	15	93	6	51	44	0	0	55	0.99
27009--27108	22	4.5	22	76	5	85	39	12	14	35	1.82
27031--27154	22	5.5	22	75	11	90	39	8	15	37	1.77
27009--27189	68	2.7	66	83	5	211	38	9	15	37	1.80
27194--28161	22	43.7	22	66	18	266	37	9	16	36	1.82
27879--27936	23	2.5	23	88	5	82	37	6	13	41	1.72
27855--27982	45	2.8	45	78	10	136	36	10	16	36	1.82
28143--28184	22	1.9	22	85	9	59	52	4	14	28	1.62
28962--29047	43	2.0	42	86	2	118	32	11	8	47	1.69
34161--34213	20	2.5	23	73	20	60	33	11	18	35	1.87
35914--35964	22	2.2	24	83	16	72	41	0	0	58	0.98
35914--35962	25	2.0	25	84	8	64	40	0	0	59	0.98
42435--42494	30	2.0	30	90	0	93	50	13	11	25	1.75
42557--42712	30	5.3	30	89	3	219	37	24	14	23	1.92
42557--42712	59	2.6	59	88	4	233	37	24	14	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42511--42803	29	10.0	29	80	5	126	37	23	17	22	1.94
43384--43437	22	2.5	20	77	14	54	40	11	9	38	1.73

Tables:   1

The End!