Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018653.1 Corchorus olitorius cultivar O-4 contig18686, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59941

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3691--3723
11
2.9
11
95
4
57
78
9
3
9
1.05
4702--4781
40
2.0
40
95
0
142
32
2
10
55
1.47
12447--12488
21
2.0
21
90
4
68
28
19
19
33
1.96
12565--12617
21
2.5
21
100
0
106
32
18
18
30
1.96
14801--14979
97
1.8
98
98
1
351
25
11
32
31
1.91
17596--17655
13
5.1
13
66
22
51
38
0
13
48
1.42
17596--17687
23
4.0
23
88
1
139
36
0
13
50
1.41
38972--39046
35
2.1
35
97
0
141
22
17
18
41
1.90
39088--39119
16
2.0
16
93
0
55
53
0
0
46
1.00
40256--40345
20
4.5
20
70
24
73
56
4
3
35
1.36
40287--40342
17
3.3
17
85
5
69
55
3
3
37
1.35
40670--40708
19
2.1
19
95
0
69
33
0
30
35
1.58
41778--41899
62
2.0
62
95
3
219
22
5
24
46
1.73

Tables:   1

The End!