Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018656.1 Corchorus olitorius cultivar O-4 contig18689, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23452
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:7273 original size:25 final size:25

Alignment explanation


    Indices: 7245--7301  Score: 60
    Period size: 25  Copynumber: 2.3  Consensus size: 25

       7235 CAGCCTATGT

                         *        ** 
       7245 GTTTGCTAAACACCAGCACAGGTTC
          1 GTTTGCTAAACACAAGCACAGGCGC

                * *    *             
       7270 GTTTTCCAAACGCAAGCACAGGCGC
          1 GTTTGCTAAACACAAGCACAGGCGC

                   
       7295 GTTTGCT
          1 GTTTGCT

       7302 CAGCGCATGC


Statistics
Matches: 24,  Mismatches: 8, Indels: 0
        0.75            0.25        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25


Consensus pattern (25 bp):   
GTTTGCTAAACACAAGCACAGGCGC

Found at i:13062 original size:2 final size:2

Alignment explanation


    Indices: 13055--13079  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

      13045 ACTGGAACTC

                                                 
      13055 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

      13080 AAAGTTATTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.