Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018666.1 Corchorus olitorius cultivar O-4 contig18699, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17361

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
132--187
28
2.1
25
84
15
69
50
7
14
28
1.69
2184--2227
23
2.0
22
90
4
70
43
13
0
43
1.44
2811--2900
42
2.1
42
83
0
108
13
32
14
40
1.85
4201--4305
16
6.6
16
85
6
133
5
16
42
35
1.72
4294--4344
6
8.8
6
82
8
61
1
19
50
27
1.58
4294--4344
11
4.5
11
78
7
57
1
19
50
27
1.58
4294--4344
23
2.2
23
96
0
93
1
19
50
27
1.58
4295--4353
17
3.4
18
83
6
77
3
20
49
27
1.65
4301--4351
23
2.2
23
89
0
75
3
21
50
23
1.65
4765--4836
31
2.3
31
75
17
78
61
8
4
26
1.43
5146--5203
26
2.4
22
76
21
53
41
1
1
55
1.20
5264--5330
12
5.9
12
73
19
72
1
25
47
25
1.60
5264--5312
17
2.9
17
87
0
80
0
26
48
24
1.51
5320--5363
16
2.8
16
89
0
70
6
15
40
36
1.74
7566--7665
27
3.7
27
89
1
137
36
27
18
19
1.94
8037--8473
50
8.7
50
93
1
705
27
13
29
29
1.94
8561--8782
79
2.8
80
89
4
335
38
14
20
27
1.91
9197--9340
50
2.9
50
93
2
238
37
13
16
32
1.87
9203--9351
48
3.1
48
94
1
244
38
12
16
33
1.85
9626--9659
11
3.1
11
91
0
50
5
14
0
79
0.91
9951--10002
14
3.5
15
74
10
54
15
0
13
71
1.15
9947--10034
32
2.9
31
85
13
105
15
1
14
68
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9953--10043
24
3.8
24
84
8
98
16
1
14
68
1.28
9945--9995
6
8.7
6
78
20
54
15
0
13
70
1.17
10040--10083
14
3.1
14
86
3
61
13
13
6
65
1.44

Tables:   1

The End!