Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018667.1 Corchorus olitorius cultivar O-4 contig18700, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4460
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34


Found at i:9 original size:2 final size:2

Alignment explanation


    Indices: 3--27  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

          1 AG

                                                 
          3 GA GA GA GA GA GA GA GA GA GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA GA GA G

         28 CTTAAGTCAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00


Consensus pattern (2 bp):   
GA

Found at i:1843 original size:28 final size:27

Alignment explanation


    Indices: 1749--1848  Score: 123
    Period size: 27  Copynumber: 3.7  Consensus size: 27

       1739 GTGATCCTAG

                                 **     
       1749 AATGACCAAAATGCCCCT-GAACATGCA
          1 AATGACCAAAATGCCCCTGGATTATG-A

                                    *   
       1776 AATGACCAAAATGCCCCTGGATGTGTG-
          1 AATGACCAAAATGCCCCTGGAT-TATGA

                                   *    
       1803 AATGACCAAAATGCCCCTGGATTTTGAA
          1 AATGACCAAAATGCCCCTGGATTATG-A

                              
       1831 AATGACCAAAATGCCCCT
          1 AATGACCAAAATGCCCCT

       1849 AGATGACCCT


Statistics
Matches: 65,  Mismatches: 4, Indels: 7
        0.86            0.05        0.09

Matches are distributed among these distances:
  26    3  0.05
  27   40  0.62
  28   20  0.31
  29    2  0.03

ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20


Consensus pattern (27 bp):   
AATGACCAAAATGCCCCTGGATTATGA
Done.