Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018668.1 Corchorus olitorius cultivar O-4 contig18701, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75815

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7754--7788
8
4.4
8
92
0
61
77
0
22
0
0.78
12928--12965
11
3.5
11
89
10
51
39
0
2
57
1.12
20379--20428
26
1.9
26
88
8
75
26
18
14
42
1.87
21006--21075
33
2.1
34
86
2
97
54
4
24
17
1.61
24900--24952
26
2.0
26
89
7
81
56
0
0
43
0.99
32358--32385
2
14.0
2
100
0
56
50
0
0
50
1.00
34100--34145
16
2.9
16
93
0
83
26
26
15
32
1.95
37428--37471
22
2.0
22
91
8
72
13
6
34
45
1.70
46726--47006
2
140.5
2
100
0
562
0
0
49
50
1.00
47044--47075
2
16.0
2
100
0
64
0
0
50
50
1.00
47112--47137
2
13.0
2
100
0
52
0
0
50
50
1.00
47050--47303
62
4.0
62
93
6
454
20
15
26
37
1.93
47174--47205
2
16.0
2
100
0
64
0
0
50
50
1.00
46981--47303
130
2.5
130
97
2
605
20
15
26
37
1.92
47242--47267
2
13.0
2
100
0
52
0
0
50
50
1.00
56836--56988
57
2.6
58
86
4
191
28
24
16
31
1.96
56881--57003
57
2.1
57
83
1
147
26
26
15
30
1.96
65961--65990
2
15.5
2
93
6
53
50
0
0
50
1.00
66740--66856
47
2.5
47
91
0
180
14
9
29
47
1.76
67710--67740
10
3.1
10
90
0
53
16
0
0
83
0.64
69298--69344
23
2.0
23
84
8
60
42
8
12
36
1.74
71115--71177
20
3.5
20
73
24
75
55
1
3
39
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74740--74796
25
2.4
24
88
5
80
59
3
5
31
1.36

Tables:   1

The End!