Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018674.1 Corchorus olitorius cultivar O-4 contig18707, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 775

Length: 1293
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28


Found at i:957 original size:9 final size:9

Alignment explanation


    Indices: 933--981  Score: 89
    Period size: 9  Copynumber: 5.3  Consensus size: 9

        923 CCCTTTTTCT

                     
        933 CAAGAACAC
          1 CAAGAACAC

                      
        942 TCAAGAACAC
          1 -CAAGAACAC

                     
        952 CAAGAACAC
          1 CAAGAACAC

                     
        961 CAAGAACAC
          1 CAAGAACAC

                     
        970 CAAGAACAC
          1 CAAGAACAC

               
        979 CAA
          1 CAA

        982 CCACCACCCC


Statistics
Matches: 39,  Mismatches: 0, Indels: 1
        0.98            0.00        0.03

Matches are distributed among these distances:
   9   30  0.77
  10    9  0.23

ACGTcount: A:0.55, C:0.33, G:0.10, T:0.02


Consensus pattern (9 bp):   
CAAGAACAC

Found at i:999 original size:20 final size:21

Alignment explanation


    Indices: 969--1007  Score: 71
    Period size: 20  Copynumber: 1.9  Consensus size: 21

        959 ACCAAGAACA

                                 
        969 CCAAGAACACCAACCACCACC
          1 CCAAGAACACCAACCACCACC

                               
        990 CCAA-AACACCAACCACCA
          1 CCAAGAACACCAACCACCA

       1008 ACGCCGGCCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20   14  0.78
  21    4  0.22

ACGTcount: A:0.46, C:0.51, G:0.03, T:0.00


Consensus pattern (21 bp):   
CCAAGAACACCAACCACCACC
Done.