Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018676.1 Corchorus olitorius cultivar O-4 contig18709, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127677

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
856--894
17
2.3
17
86
0
51
2
28
0
69
1.02
889--930
18
2.3
18
84
12
50
14
9
2
73
1.18
11347--11408
29
2.1
29
81
0
70
46
17
11
24
1.81
11531--11558
2
14.0
2
100
0
56
50
0
0
50
1.00
17742--17778
18
2.0
19
94
5
67
56
0
10
32
1.34
18749--19370
310
2.0
309
95
0
1127
27
19
13
38
1.90
27098--27122
6
4.2
6
100
0
50
80
0
0
20
0.72
27365--27394
3
10.0
3
100
0
60
0
33
0
66
0.92
29815--29889
29
2.5
30
86
6
107
20
14
21
44
1.87
32814--32853
6
6.7
6
100
0
80
0
50
15
35
1.44
39571--39826
124
2.0
127
91
6
421
37
10
1
49
1.49
49565--49605
18
2.3
18
84
12
50
21
31
2
43
1.66
49694--49735
21
2.0
21
95
0
75
45
11
19
23
1.83
49995--50043
22
2.2
22
96
0
89
38
12
16
32
1.86
55047--55127
42
1.9
42
87
5
119
24
18
23
33
1.97
55517--55548
12
2.7
12
100
0
64
53
31
15
0
1.43
61581--61614
6
5.8
6
93
6
61
70
0
11
17
1.16
61581--61614
17
2.0
17
100
0
68
70
0
11
17
1.16
70268--70292
10
2.5
10
100
0
50
0
92
0
8
0.40
71417--71475
25
2.6
21
73
19
64
44
11
3
40
1.58
71478--71871
213
1.8
213
90
2
628
34
17
18
29
1.94
75319--75350
2
16.5
2
93
6
57
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85162--85197
5
7.8
5
93
6
51
19
0
0
80
0.71
85152--85197
8
5.4
9
82
17
55
17
0
0
82
0.67
85155--85197
22
2.0
22
90
9
70
18
0
0
81
0.69
89324--89530
106
1.9
108
89
4
321
20
27
6
45
1.76
95776--95829
27
2.0
27
96
0
99
25
12
29
31
1.93
96059--96101
2
21.5
2
100
0
86
48
0
0
51
1.00
102312--102369
29
2.0
30
83
10
75
50
1
5
43
1.35
102470--102518
26
1.9
26
88
12
75
42
0
0
57
0.99
122225--122262
11
3.5
11
85
10
51
57
2
0
39
1.12
122518--122684
82
2.0
83
83
6
214
33
16
20
29
1.95

Tables:   1

The End!