Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018677.1 Corchorus olitorius cultivar O-4 contig18710, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34312

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22--103
33
2.5
33
87
0
110
15
37
31
14
1.88
5288--5449
81
2.0
81
97
0
306
38
10
23
27
1.87
5436--5468
2
16.5
2
93
0
57
0
3
48
48
1.17
6934--7018
28
3.0
28
89
3
118
57
23
9
9
1.59
6907--7013
42
2.5
42
81
3
126
57
22
11
9
1.62
6907--7018
14
8.0
14
81
9
95
57
22
10
9
1.62
10465--10504
17
2.4
17
82
0
53
7
12
7
72
1.27
11643--11772
65
2.0
65
96
0
242
12
30
9
48
1.72
14254--14307
27
1.9
29
82
14
69
48
7
14
29
1.71
17684--18219
267
2.0
265
90
1
833
35
13
13
37
1.84
17996--18425
215
2.0
214
89
2
657
36
14
12
37
1.83
20360--20435
21
3.5
22
73
8
66
47
7
14
30
1.73
20395--20545
22
6.9
22
74
13
82
39
6
13
39
1.71
20420--20545
22
5.8
21
77
9
92
38
6
12
42
1.68
20420--20541
43
2.8
43
81
3
118
37
5
13
43
1.67
21526--21583
22
2.8
21
82
10
66
27
1
17
53
1.53
23174--23283
58
1.9
58
88
3
168
33
14
18
33
1.91
24798--25203
201
2.0
199
96
2
751
43
8
11
36
1.71
30178--30576
204
2.0
202
95
1
717
39
11
10
38
1.77
31844--31956
56
2.0
58
81
10
135
33
13
20
32
1.91
33213--33282
36
1.9
36
91
0
113
21
10
8
60
1.55

Tables:   1

The End!