Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018678.1 Corchorus olitorius cultivar O-4 contig18711, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27857

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
474--883
202
2.0
201
95
2
741
43
8
11
36
1.71
994--1074
39
2.0
40
92
2
137
37
3
8
50
1.51
1290--1322
2
16.5
2
87
12
50
45
0
3
51
1.16
1828--1900
33
2.2
33
87
0
101
8
39
35
16
1.78
5865--5957
46
2.0
46
100
0
186
27
15
10
46
1.79
5867--5941
25
3.2
25
60
21
61
28
16
12
44
1.83
6692--6787
48
2.0
48
100
0
192
29
12
16
41
1.85
10692--10720
7
4.1
7
100
0
58
55
0
44
0
0.99
19051--19307
138
1.8
138
84
5
347
22
19
24
33
1.97
19176--19474
76
3.9
75
75
8
239
21
17
28
32
1.96
22437--22479
23
1.9
22
85
4
59
46
2
9
41
1.48
22731--22770
21
2.0
21
85
5
55
40
12
5
42
1.64
22738--22776
21
1.9
21
84
5
53
41
15
5
38
1.69
23048--23081
17
1.9
17
88
5
50
64
2
5
26
1.30
26307--26338
12
2.7
12
100
0
64
25
0
9
65
1.22
27167--27292
62
2.0
62
92
0
207
26
9
32
31
1.88

Tables:   1

The End!