genome.fa.s18679.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018679.1 Corchorus olitorius cultivar O-4 contig18712, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64836

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5552--5653	50	2.0	51	98	1	197	38	15	10	35	1.83
12004--12046	22	2.0	23	86	9	63	39	18	20	20	1.93
16749--16852	51	2.0	51	100	0	208	28	7	33	29	1.85
19439--19524	45	2.0	43	88	8	131	45	12	12	29	1.79
19513--19603	38	2.4	37	85	5	121	35	14	16	34	1.89
19521--19603	37	2.2	38	85	6	116	34	15	15	33	1.90
23869--23913	23	2.0	23	90	0	72	42	4	24	28	1.74
23829--23970	73	1.9	74	92	1	241	42	10	22	24	1.85
23942--23975	8	4.2	8	84	0	50	50	2	20	26	1.63
23932--23973	16	2.4	18	84	11	61	45	4	21	28	1.72
23901--24145	58	4.3	58	89	3	361	43	10	20	24	1.84
24000--24033	8	4.2	8	84	0	50	50	2	20	26	1.63
24115--24167	22	2.4	22	90	0	79	49	3	18	28	1.65
23999--24304	136	2.2	137	88	2	436	44	8	21	25	1.81
24057--24225	78	2.1	81	81	8	195	45	7	20	26	1.77
24137--24282	58	2.6	57	85	5	206	42	8	22	26	1.83
24252--24617	8	49.9	8	69	21	106	46	4	19	29	1.70
24251--24333	22	3.7	22	95	1	148	46	4	21	26	1.71
24292--24617	36	8.6	37	81	12	244	46	4	19	30	1.70
24251--24622	58	6.2	56	79	12	266	46	4	19	29	1.70
24269--24622	22	16.6	19	73	19	130	46	4	19	29	1.69
25784--25884	50	2.0	50	94	0	175	34	14	17	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26811--26840	15	2.0	15	93	0	51	43	26	10	20	1.83
28472--28520	19	2.5	20	83	10	64	6	0	14	79	0.91
29209--29373	75	2.2	75	90	2	251	30	26	8	35	1.86
34301--34330	12	2.4	12	94	5	51	0	10	0	90	0.47
48510--48540	15	2.1	15	100	0	62	19	6	12	61	1.53
51152--51223	16	4.5	16	76	0	72	51	30	8	9	1.64
51150--51223	32	2.3	31	77	6	85	50	31	9	9	1.67
51412--51666	131	2.0	128	89	6	394	37	10	1	50	1.48
51652--51690	14	2.9	13	80	3	51	41	2	2	53	1.28
52563--52643	16	5.1	15	73	10	72	41	34	7	16	1.76
52578--52661	16	5.2	17	73	11	79	41	34	4	19	1.72
52562--52661	32	3.2	31	88	7	139	41	35	6	18	1.75
55033--55429	205	1.9	202	87	4	580	37	19	14	27	1.91
64108--64173	31	2.2	31	86	5	91	50	13	15	21	1.78

Tables:   1

The End!