genome.fa.s18680.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018680.1 Corchorus olitorius cultivar O-4 contig18713, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43177

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009--1052	23	1.9	23	81	9	54	61	0	13	25	1.32
994--1202	105	2.0	102	83	8	266	51	2	11	34	1.51
1289--1409	60	2.0	60	98	0	233	39	2	20	37	1.66
3051--3264	22	9.7	22	68	13	109	35	8	17	39	1.80
3286--3709	22	18.9	22	68	18	151	38	9	16	35	1.82
3451--3565	21	5.4	21	77	16	80	41	8	13	36	1.75
3510--3563	19	2.7	21	88	11	78	42	5	9	42	1.60
3788--3978	22	9.0	22	71	13	114	39	8	19	32	1.82
3935--3980	23	2.0	23	95	0	83	32	8	19	39	1.82
3977--4204	22	10.3	22	68	16	87	35	12	15	37	1.85
4075--4160	45	1.9	45	83	4	111	34	11	15	38	1.83
4256--4303	22	2.2	22	85	7	62	50	8	14	27	1.71
6813--6869	30	1.9	30	85	7	80	42	8	17	31	1.80
12175--12231	30	1.9	30	85	7	80	42	8	17	31	1.80
14526--14562	2	19.0	2	94	5	67	51	0	0	48	1.00
17653--17729	37	2.1	37	87	2	111	35	10	7	46	1.67
18712--18748	19	1.9	19	94	0	65	29	18	13	37	1.90
20334--20366	16	2.1	16	88	11	50	15	0	18	66	1.25
21206--21232	13	2.1	13	100	0	54	40	0	14	44	1.46
23386--23621	82	2.9	79	91	3	391	38	12	11	37	1.79
25509--25642	70	1.9	68	95	3	241	39	30	5	23	1.79
26769--26906	53	2.6	53	93	5	228	38	14	17	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39024--39073	25	2.0	25	100	0	100	44	16	24	16	1.86
42956--42993	2	19.5	2	89	5	60	47	0	2	50	1.15

Tables:   1

The End!