Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018682.1 Corchorus olitorius cultivar O-4 contig18715, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37292

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1238--1279
15
2.7
15
92
3
66
66
16
4
11
1.40
6182--6847
330
2.0
330
98
0
1287
30
21
19
27
1.98
16449--16520
24
3.0
24
100
0
144
37
20
8
33
1.83
16972--16997
12
2.2
12
100
0
52
34
0
15
50
1.45
18625--18678
21
2.6
21
96
0
99
20
25
12
40
1.88
19338--19526
101
1.9
100
88
2
288
46
16
15
21
1.84
21622--21657
15
2.4
15
90
0
54
22
27
13
36
1.92
25866--25893
11
2.5
11
100
0
56
89
0
10
0
0.49
26699--26728
13
2.3
13
100
0
60
40
0
0
60
0.97
29187--29217
14
2.2
14
100
0
62
64
0
0
35
0.94
29416--29753
178
1.9
178
84
3
457
34
13
16
36
1.87
32333--32394
21
3.0
21
82
0
70
59
16
3
20
1.50
34196--34260
21
3.1
21
62
16
53
50
15
6
27
1.67
34329--34442
56
2.0
56
98
0
219
40
1
24
33
1.66

Tables:   1

The End!