Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018683.1 Corchorus olitorius cultivar O-4 contig18716, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46386

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69--99
14
2.2
14
94
0
53
0
9
16
74
1.07
4213--4308
50
2.0
48
88
9
144
31
13
9
45
1.75
8319--8365
17
2.9
16
81
12
51
76
0
19
4
0.95
8319--8360
11
3.9
11
79
14
52
78
0
19
2
0.86
8319--8359
21
2.0
21
85
9
57
80
0
17
2
0.82
9529--9598
34
2.1
33
86
7
97
42
17
15
24
1.88
9569--9703
52
2.6
52
92
2
227
40
14
17
28
1.88
9680--9842
34
4.8
34
90
1
245
36
19
14
28
1.92
9680--9842
69
2.4
68
89
3
247
36
19
14
28
1.92
13200--13240
2
20.5
2
100
0
82
48
0
0
51
1.00
14015--14048
13
2.6
13
95
0
59
14
8
17
58
1.61
31725--31749
3
8.3
3
100
0
50
32
0
0
68
0.90
31766--31806
12
3.4
12
81
18
50
82
0
0
17
0.66
31764--31809
11
3.9
12
88
11
69
80
0
0
19
0.71
32288--32618
179
1.9
178
87
3
486
34
14
16
35
1.89
35335--35506
86
2.0
86
98
0
335
32
8
23
35
1.85
36474--36520
22
2.1
23
88
4
69
17
12
25
44
1.84
36802--36920
60
2.0
60
91
0
193
35
8
21
34
1.84

Tables:   1

The End!