genome.fa.s18684.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018684.1 Corchorus olitorius cultivar O-4 contig18717, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  186691

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2680--2751	19	3.8	18	74	17	58	30	2	5	61	1.33
5991--6046	17	3.3	17	87	7	78	58	1	5	33	1.31
6366--6404	19	2.1	19	95	0	69	33	0	30	35	1.58
9631--9752	65	1.9	65	89	0	190	18	27	4	48	1.69
10416--10457	21	2.0	21	86	9	59	26	4	33	35	1.77
10423--10464	21	2.0	22	85	4	59	28	4	33	33	1.78
10596--10703	57	1.9	57	90	0	171	42	9	15	32	1.79
11158--11300	71	2.0	72	98	1	279	50	11	8	30	1.67
12079--12112	17	2.0	17	94	0	59	29	2	0	67	1.05
14905--14943	2	19.5	2	100	0	78	51	0	0	48	1.00
39365--39644	107	2.7	106	86	7	396	41	9	7	41	1.67
45073--45108	2	18.5	2	94	5	65	52	0	0	47	1.00
50047--50275	22	10.3	22	72	12	155	35	10	17	36	1.84
50044--50275	66	3.5	65	81	8	209	35	10	18	36	1.85
50275--50316	22	1.9	22	95	0	75	28	4	16	50	1.66
50378--50566	22	8.5	23	75	11	108	43	9	14	32	1.78
50354--50566	66	3.2	64	72	13	159	43	9	15	32	1.78
50647--50915	22	12.7	21	72	16	128	39	9	15	35	1.80
50669--50790	44	2.8	43	85	9	142	39	10	13	36	1.80
50811--50889	23	3.5	23	91	1	115	37	6	17	37	1.76
50811--50901	23	4.0	23	84	7	114	37	6	18	37	1.77
51335--51396	29	2.2	29	82	5	74	37	4	3	54	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55727--55789	22	2.8	22	74	11	56	30	14	19	36	1.91
55672--55864	44	4.4	44	75	8	130	32	11	17	38	1.86
55736--55873	22	6.2	22	73	7	100	33	12	20	34	1.90
55736--55950	22	9.8	22	68	12	95	38	12	16	33	1.85
55918--55965	22	2.2	22	84	0	60	52	8	12	27	1.67
59165--59426	134	1.9	137	87	7	386	47	1	11	39	1.49
59334--59753	219	1.9	219	93	0	725	44	5	14	36	1.67
59752--59862	27	4.2	26	71	15	84	37	7	2	52	1.43
62224--62280	16	3.6	16	72	9	62	7	17	40	35	1.77
62270--62318	23	2.1	23	88	0	71	2	20	46	30	1.62
62455--62501	13	3.8	12	78	13	51	55	4	0	40	1.19
62755--62826	31	2.3	32	76	11	87	62	8	2	26	1.37
72884--72953	14	4.9	14	76	13	79	67	7	12	12	1.42
73912--73942	16	1.9	16	100	0	62	25	6	16	51	1.68
86162--86202	22	1.9	22	90	5	66	39	12	4	43	1.63
88120--88315	81	2.4	81	82	10	231	52	5	18	23	1.67
90350--90610	104	2.5	104	90	3	400	40	8	9	41	1.67
90994--91031	19	2.0	20	89	5	60	44	2	2	50	1.30
92081--92130	26	1.9	26	95	0	91	54	4	4	38	1.38
96027--96062	19	1.9	18	88	5	54	33	22	2	41	1.68
97833--97878	22	2.1	22	95	0	83	63	13	6	17	1.50
101279--101304	11	2.4	11	100	0	52	84	0	7	7	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102834--102869	19	1.9	18	88	5	54	33	22	2	41	1.68
108415--108481	27	2.4	28	80	16	77	46	0	1	52	1.09
108701--108740	2	20.0	2	100	0	80	50	0	0	50	1.00
110165--110232	21	3.2	21	64	15	50	51	14	5	27	1.65
110152--110231	42	1.9	42	92	0	133	48	15	7	28	1.71
111354--111421	29	2.3	30	87	2	102	39	10	16	33	1.82
112187--112241	16	3.4	16	75	9	67	34	27	18	20	1.95
112302--112413	51	2.1	51	80	11	120	38	8	1	50	1.44
113310--113373	29	2.1	30	82	5	76	26	12	9	51	1.70
117004--117099	31	3.0	32	80	4	95	26	23	19	30	1.98
117043--117152	31	3.5	31	77	4	114	20	23	20	35	1.96
119087--119191	31	3.4	31	90	3	151	39	20	13	26	1.90
119703--119816	58	1.9	59	85	1	158	12	33	8	45	1.72
120845--120896	25	2.1	25	85	0	68	19	5	11	63	1.47
122374--122421	23	2.1	23	88	0	69	2	29	2	66	1.14
126316--126356	5	8.6	5	83	5	50	75	0	0	24	0.80
128317--128393	34	2.3	34	100	0	154	32	25	5	36	1.78
130479--130529	22	2.3	22	100	0	102	25	11	33	29	1.91
133541--133591	22	2.3	22	83	6	59	41	9	9	39	1.71
145134--145395	107	2.5	106	91	2	413	41	9	8	40	1.68
158986--159025	20	2.0	20	85	0	53	35	10	12	42	1.76
162413--162437	13	1.9	13	100	0	50	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162856--163333	22	21.7	22	71	13	157	34	14	10	39	1.81
163102--163854	44	17.3	42	67	16	219	35	16	9	38	1.82
163439--163630	22	8.6	22	74	10	104	33	15	9	41	1.80
163458--163586	66	2.0	66	84	0	168	34	15	10	40	1.81
163459--163633	22	7.9	22	75	8	110	34	15	9	41	1.79
163459--163854	22	17.7	22	67	19	98	35	17	9	37	1.82
164172--164242	26	2.7	27	75	2	72	18	16	23	40	1.90
168045--168089	21	2.0	22	83	8	56	44	4	11	40	1.60
170246--170311	19	3.3	19	69	19	62	48	9	10	31	1.69
170245--170331	41	2.1	42	97	2	167	48	8	11	32	1.68
170257--170323	19	3.4	19	69	18	64	41	5	13	38	1.69
170834--170898	27	2.4	28	79	5	80	41	7	13	36	1.74
170842--170898	14	4.3	13	82	10	62	38	7	14	40	1.73
172116--172228	22	5.2	22	68	10	81	37	18	9	34	1.84
172393--172431	20	2.0	20	85	10	53	64	2	5	28	1.28
172792--172828	2	19.0	2	88	5	58	51	0	2	45	1.15
176669--176921	56	4.6	55	83	2	301	44	21	8	24	1.80
176596--176762	77	2.2	76	82	1	208	44	21	9	23	1.81
176673--176921	110	2.3	111	87	0	347	44	22	8	24	1.79
176783--177029	132	1.9	131	87	0	368	44	21	9	25	1.81
176914--177057	54	2.6	55	80	4	148	43	22	12	22	1.86
176597--177036	242	1.8	242	88	0	673	44	21	9	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177043--177099	21	2.7	21	80	0	69	35	24	19	21	1.96
176783--177060	132	2.1	132	85	3	364	43	21	10	24	1.83
176968--177149	97	1.9	96	84	5	242	37	24	14	23	1.92
177155--177194	21	1.9	21	89	0	62	42	27	10	20	1.83
177269--177471	55	3.7	54	82	5	239	43	20	10	25	1.83
177269--177471	54	3.7	53	83	4	201	43	20	10	25	1.83
184485--184529	8	5.4	8	89	10	72	51	13	35	0	1.41
186589--186632	2	23.0	2	88	9	65	45	0	0	54	0.99
186593--186637	14	3.1	14	83	6	54	42	0	0	57	0.98

Tables:   1

The End!