Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018685.1 Corchorus olitorius cultivar O-4 contig18718, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5411
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:3631 original size:12 final size:12

Alignment explanation


    Indices: 3610--3642  Score: 57
    Period size: 12  Copynumber: 2.8  Consensus size: 12

       3600 CCATGCAAAA

                 *      
       3610 AATAAGTAAATC
          1 AATAAATAAATC

                        
       3622 AATAAATAAATC
          1 AATAAATAAATC

                     
       3634 AATAAATAA
          1 AATAAATAA

       3643 TGAAAACAAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.67, C:0.06, G:0.03, T:0.24


Consensus pattern (12 bp):   
AATAAATAAATC
Done.